Transcript: FAM41AY1:6

Basic information

LNCipedia transcript ID: FAM41AY1:6 
LNCipedia gene ID: FAM41AY1
RefSeq ID: NR_028083
Location (hg38): chrY:17500958-17516742
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2043 bp
Exons: 10
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT139536; NR_028084; NR_028083; NR_028083.1
Alternative gene names: FAM41AY1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 19.3454 non-coding 
CPAT coding probability 10.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM41AY1:6 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDY2A-1:2
4.0 lnc-CDY2A-1:2
4.1 lnc-CDY2A-1:2
5.0 lnc-CDY2A-1:2
5.1 FAM41AY1:3
5.2 FAM41AY1:6