Transcript: FAM41AY1:7

Basic information

LNCipedia transcript ID: FAM41AY1:7 
HGNC Gene Symbol: FAM41AY1    
HGNC Full Gene Name: family with sequence similarity 41 member A, Y-linked 1
Ensembl Gene ID: ENSG00000224989
Ensembl Transcript ID: ENST00000421205
Location (hg38): chrY:17500958-17515018
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 906 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT147776; ENST00000421205.2
Alternative gene names: ENSG00000224989.2; FAM41AY1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.5336 non-coding 
CPAT coding probability 11.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM41AY1:7 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CDY2A-1:3
4.0 lnc-CDY2A-1:3
4.1 lnc-CDY2A-1:3
5.0 lnc-CDY2A-1:3
5.1 FAM41AY1:4
5.2 FAM41AY1:7