Transcript: FAM83C-AS1:1

Basic information

LNCipedia transcript ID: FAM83C-AS1:1 
HGNC Gene Symbol: FAM83C-AS1    
HGNC Full Gene Name: FAM83C antisense RNA 1
Ensembl Gene ID: ENSG00000235214
Ensembl Transcript ID: ENST00000429167
Location (hg38): chr20:35285251-35285756
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 352 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429167.1; FAM83C-AS1-001; OTTHUMT00000078847.2; NONHSAT079491
Alternative gene names: ENSG00000235214.1; FAM83C-AS1; OTTHUMG00000032327.2; dJ614O4.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.4172 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM83C-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MMP24-1:1
4.0 FAM83C-AS1:1
4.1 FAM83C-AS1:1
5.0 FAM83C-AS1:1
5.1 FAM83C-AS1:1
5.2 FAM83C-AS1:1