Transcript: FAM87A:10

Basic information

LNCipedia transcript ID: FAM87A:10 
HGNC Gene Symbol: FAM87A    
HGNC Full Gene Name: family with sequence similarity 87 member A
Ensembl Gene ID: ENSG00000182366
Ensembl Transcript ID: ENST00000523195
Location (hg38): chr8:379088-383174
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 925 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000523195.4
Alternative gene names: ENSG00000182366.5; FAM87A; ENSG00000182366.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.8688 non-coding 
CPAT coding probability 43.91% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM87A:10 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-63E5.6.1-1:2
4.0 lnc-RP11-63E5.6.1-1:2
4.1 lnc-RP11-63E5.6.1-1:2
5.0 lnc-RP11-63E5.6.1-1:2
5.1 FAM87A:4
5.2 FAM87A:10