Transcript: FAM87A:13

Basic information

LNCipedia transcript ID: FAM87A:13 
HGNC Gene Symbol: FAM87A    
HGNC Full Gene Name: family with sequence similarity 87 member A
Ensembl Gene ID: ENSG00000182366
Ensembl Transcript ID: ENST00000602608
Location (hg38): chr8:376243-377759
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1517 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT124586; ENST00000602608.1
Alternative gene names: ENSG00000182366.5; FAM87A; ENSG00000182366.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6064 non-coding 
CPAT coding probability 9.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM87A:13 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ
  2. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-63E5.6.1-1:5
4.0 lnc-RP11-63E5.6.1-1:5
4.1 lnc-RP11-63E5.6.1-1:5
5.0 lnc-RP11-63E5.6.1-1:5
5.1 FAM87A:7
5.2 FAM87A:13