Transcript: FAM87B:6

Basic information

LNCipedia transcript ID: FAM87B:6 
HGNC Gene Symbol: FAM87B    
HGNC Full Gene Name: family with sequence similarity 87 member B
Ensembl Gene ID: ENSG00000177757
Ensembl Transcript ID: ENST00000326734
Location (hg38): chr1:817371-819837
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1947 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000326734.2
Alternative gene names: ENSG00000177757.2; FAM87B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 40.5747 non-coding 
CPAT coding probability 37.41% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FAM87B:6 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AL669831.1-3:37
4.1 lnc-AL669831.1-3:37
5.0 lnc-AL669831.1-3:37
5.1 FAM87B:3
5.2 FAM87B:6