Transcript: FAM87B:7

Basic information

LNCipedia transcript ID: FAM87B:7 
LNCipedia gene ID: FAM87B
Location (hg38): chr1:817547-843480
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: ucscGeneNc_uc009vjo_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.0694 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM87B:7 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL669831.1-3:2
4.0 lnc-AL669831.1-3:2
4.1 lnc-AL669831.1-3:2
5.0 lnc-AL669831.1-3:2
5.1 FAM87B:4
5.2 FAM87B:7