Transcript: FAM99A:2

Basic information

LNCipedia transcript ID: FAM99A:2 
LNCipedia gene ID: FAM99A
RefSeq ID: NR_026643
Location (hg38): chr11:1665599-1667856
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1430 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026643; NR_026643.1
Alternative gene names: FLJ42833; FAM99A


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.162 non-coding 
CPAT coding probability 9.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM99A:2 no no no no

Available literature

  1. Ma (2015), Co‑expression of the carbamoyl‑phosphate synthase 1 gene and its long non‑coding RNA correlates with poor prognosis of patients with intrahepatic cholangiocarcinoma., Mol Med Rep
  2. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  3. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRTAP5-6-2:2
4.0 FAM99A:2
4.1 FAM99A:2
5.0 FAM99A:2
5.1 FAM99A:2
5.2 FAM99A:2