Transcript: FAM99B:1

Basic information

LNCipedia transcript ID: FAM99B:1 
HGNC Gene Symbol: FAM99B    
HGNC Full Gene Name: family with sequence similarity 99 member B
Ensembl Gene ID: ENSG00000205865
Ensembl Transcript ID: ENST00000382166
Location (hg38): chr11:1683269-1685629
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1067 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000382166.2; FAM99B-001; OTTHUMT00000127917.1; NONHSAT017416
Alternative gene names: ENSG00000205865.4; FAM99B; OTTHUMG00000057552.1; DKFZp781M09150


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.8893 non-coding 
CPAT coding probability 9.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM99B:1 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFITM10-1:1
4.0 FAM99B:1
4.1 FAM99B:1
5.0 FAM99B:1
5.1 FAM99B:1
5.2 FAM99B:1