Transcript: FAM99B:2

Basic information

LNCipedia transcript ID: FAM99B:2 
LNCipedia gene ID: FAM99B
RefSeq ID: NR_026642
Location (hg38): chr11:1683270-1685629
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1066 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026642; NR_026642.1
Alternative gene names: DKFZp781M09150; FAM99B


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.8893 non-coding 
CPAT coding probability 9.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FAM99B:2 no no no no

Available literature

  1. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IFITM10-1:2
4.0 FAM99B:2
4.1 FAM99B:2
5.0 FAM99B:2
5.1 FAM99B:2
5.2 FAM99B:2