Transcript: FBXL19-AS1:1

Basic information

LNCipedia transcript ID: FBXL19-AS1:1 
LNCipedia gene ID: FBXL19-AS1
Location (hg38): chr16:30915911-30923295
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 7385 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA533:1
Alternative gene names: MGC125469; MGC125470; MGC125472


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 26.0926 non-coding 
CPAT coding probability 77.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FBXL19-AS1:1 yes no no no

Available literature

  1. Shen (2017), Long non-coding RNA FBXL19-AS1 plays oncogenic role in colorectal cancer by sponging miR-203., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 FBXL19-AS1:1
4.1 FBXL19-AS1:1
5.0 FBXL19-AS1:1
5.1 FBXL19-AS1:1
5.2 FBXL19-AS1:1