Transcript: FBXL19-AS1:2

Basic information

LNCipedia transcript ID: FBXL19-AS1:2 
HGNC Gene Symbol: FBXL19-AS1    
HGNC Full Gene Name: FBXL19 antisense RNA 1
Ensembl Gene ID: ENSG00000260852
Ensembl Transcript ID: ENST00000563777
RefSeq ID: NR_024348
Location (hg38): chr16:30919319-30923269
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3951 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000563777.1; FBXL19-AS1-001; OTTHUMT00000255534.2; NONHSAT141827; NR_024348; NR_024348.1
Alternative gene names: ENSG00000260852.1; FBXL19-AS1; OTTHUMG00000176767.1; MGC125469; MGC125470; MGC125472


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.138 non-coding 
CPAT coding probability 23.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FBXL19-AS1:2 yes no no no

Available literature

  1. Shen (2017), Long non-coding RNA FBXL19-AS1 plays oncogenic role in colorectal cancer by sponging miR-203., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BCL7C-2:1
4.0 FBXL19-AS1:2
4.1 FBXL19-AS1:2
5.0 FBXL19-AS1:2
5.1 FBXL19-AS1:2
5.2 FBXL19-AS1:2