Transcript: FBXO3-DT:25

Basic information

LNCipedia transcript ID: FBXO3-DT:25 
LNCipedia gene ID: FBXO3-DT
Ensembl Gene ID: ENSG00000255272
Ensembl Transcript ID: ENST00000528779
Location (hg38): chr11:33776188-33779495
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 486 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528779.1; RP11-646J21.6-001; OTTHUMT00000388828.1; NONHSAT018720
Alternative gene names: ENSG00000255272.1; RP11-646J21.6; OTTHUMG00000166273.1; ; AC113192.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.6444 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FBXO3-DT:25 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC132216.1-3:1
4.0 lnc-AC132216.1-3:1
4.1 FBXO3-AS1:12
5.0 FBXO3-AS1:12
5.1 FBXO3-DT:13
5.2 FBXO3-DT:25