Transcript: FGD5-AS1:20

Basic information

LNCipedia transcript ID: FGD5-AS1:20 
LNCipedia gene ID: FGD5-AS1
Location (hg38): chr3:14917740-14922491
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3820 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2316_chr3:14959246-14963939_hela
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 77.1854 coding 
CPAT coding probability 7.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FGD5-AS1:20 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS25-1:17
4.0 FGD5-AS1:20
4.1 FGD5-AS1:20
5.0 FGD5-AS1:20
5.1 FGD5-AS1:20
5.2 FGD5-AS1:20