Transcript: FGD5-AS1:3

Basic information

LNCipedia transcript ID: FGD5-AS1:3 
HGNC Gene Symbol: FGD5-AS1    
HGNC Full Gene Name: FGD5 antisense RNA 1
Ensembl Gene ID: ENSG00000225733
Ensembl Transcript ID: ENST00000430166
Location (hg38): chr3:14920347-14948424
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1184 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430166.1; FGD5-AS1-001; OTTHUMT00000340623.1; NONHSAT088364; ENST00000430166.5
Alternative gene names: ENSG00000225733.1; FGD5-AS1; OTTHUMG00000155555.1; ENSG00000225733.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.2221 non-coding 
CPAT coding probability 79.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FGD5-AS1:3 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRPS25-1:1
4.0 FGD5-AS1:3
4.1 FGD5-AS1:3
5.0 FGD5-AS1:3
5.1 FGD5-AS1:3
5.2 FGD5-AS1:3