Transcript: FGF10-AS1:1

Basic information

LNCipedia transcript ID: FGF10-AS1:1 
HGNC Gene Symbol: FGF10-AS1    
HGNC Full Gene Name: FGF10 antisense RNA 1
Ensembl Gene ID: ENSG00000248464
Ensembl Transcript ID: ENST00000502457
RefSeq ID: NR_108034
Location (hg38): chr5:44388732-44413989
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1894 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000502457; ENST00000502457.1; RP11-473L15.2-001; OTTHUMT00000368031.1; NONHSAT101331; NR_108034; NR_108034.1
Alternative gene names: ENSG00000248464; RP11-473L15.2; ENSG00000248464.1; OTTHUMG00000162233.1; FGF10-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.1823 non-coding 
CPAT coding probability 5.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FGF10-AS1:1 no no no no

Available literature

  1. Song (2013), Integrated analysis of dysregulated lncRNA expression in fetal cardiac tissues with ventricular septal defect., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MRPS30-5:1
3.1 lnc-MRPS30-5:1
4.0 FGF10-AS1:1
4.1 FGF10-AS1:1
5.0 FGF10-AS1:1
5.1 FGF10-AS1:1
5.2 FGF10-AS1:1