Transcript: FILNC1:16

Basic information

LNCipedia transcript ID: FILNC1:16 
LNCipedia gene ID: FILNC1
RefSeq ID: NR_038399
Location (hg38): chr6:139771073-139860471
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1294 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT115258; NR_038399; NR_038399.1
Alternative gene names: LOC100132735


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.7725 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FILNC1:16 no no no no

Available literature

  1. Xiao (2017), Energy stress-induced lncRNA FILNC1 represses c-Myc-mediated energy metabolism and inhibits renal tumor development., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HECA-2:3
4.0 lnc-HECA-2:3
4.1 lnc-HECA-2:3
5.0 lnc-HECA-2:3
5.1 FILNC1:6
5.2 FILNC1:16