Transcript: FILNC1:19

Basic information

LNCipedia transcript ID: FILNC1:19 
HGNC Gene Symbol: FILNC1    
HGNC Full Gene Name: FOXO induced long non-coding RNA 1
Ensembl Gene ID: ENSG00000231426
Ensembl Transcript ID: ENST00000414038
Location (hg38): chr6:139854850-139859808
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414038; ENST00000414038.1; RP5-899B16.1-002; OTTHUMT00000042470.1; NONHSAT115259; ENST00000414038.5
Alternative gene names: ENSG00000231426; RP5-899B16.1; ENSG00000231426.1; OTTHUMG00000015697.1; ENSG00000231426.5; AL050338.2; ENSG00000231426.6; FILNC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -188.6237 non-coding 
CPAT coding probability 4.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FILNC1:19 no no no no

Available literature

  1. Xiao (2017), Energy stress-induced lncRNA FILNC1 represses c-Myc-mediated energy metabolism and inhibits renal tumor development., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HECA-1:1
3.1 lnc-HECA-2:1
4.0 lnc-HECA-2:1
4.1 lnc-HECA-2:1
5.0 lnc-HECA-2:1
5.1 FILNC1:10
5.2 FILNC1:19