Transcript: FILNC1:23

Basic information

LNCipedia transcript ID: FILNC1:23 
HGNC Gene Symbol: FILNC1    
HGNC Full Gene Name: FOXO induced long non-coding RNA 1
Ensembl Gene ID: ENSG00000231426
Ensembl Transcript ID: ENST00000431609
Location (hg38): chr6:139854919-139860151
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 956 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000431609; ENST00000431609.1; RP5-899B16.1-001; OTTHUMT00000042469.1; NONHSAT115260
Alternative gene names: ENSG00000231426; RP5-899B16.1; ENSG00000231426.1; OTTHUMG00000015697.1; ENSG00000231426.5; AL050338.2; ENSG00000231426.6; FILNC1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -211.7725 non-coding 
CPAT coding probability 0.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FILNC1:23 no no no no

Available literature

  1. Xiao (2017), Energy stress-induced lncRNA FILNC1 represses c-Myc-mediated energy metabolism and inhibits renal tumor development., Nat Commun


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HECA-1:2
3.1 lnc-HECA-2:2
4.0 lnc-HECA-2:2
4.1 lnc-HECA-2:2
5.0 lnc-HECA-2:2
5.1 FILNC1:14
5.2 FILNC1:23