Transcript: FLG-AS1:29

Basic information

LNCipedia transcript ID: FLG-AS1:29 
LNCipedia gene ID: FLG-AS1
Ensembl Gene ID: ENSG00000236427
Ensembl Transcript ID: ENST00000429352
Location (hg38): chr1:152205858-152207057
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 397 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429352.1; RP11-107M16.2-001; OTTHUMT00000034017.1; NONHSAT006474
Alternative gene names: ENSG00000236427.1; RP11-107M16.2; OTTHUMG00000012244.1; ; AL589986.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -167.5941 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FLG-AS1:29 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LCE5A-3:1
4.0 lnc-LCE5A-3:1
4.1 FLG-AS1:29
5.0 FLG-AS1:29
5.1 FLG-AS1:29
5.2 FLG-AS1:29