Transcript: FLNC-AS1:9

Basic information

LNCipedia transcript ID: FLNC-AS1:9 
LNCipedia gene ID: FLNC-AS1
Location (hg38): chr7:128873815-128879812
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1882 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000460528.1; KCP-005; OTTHUMT00000350926.1
Alternative gene names: ENSG00000135253.8; KCP; OTTHUMG00000158363.4; ENSG00000135253.9


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 144.9988 coding 
CPAT coding probability 93.60% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FLNC-AS1:9 no no no no

Available literature

  1. Qian (2017), LncRNA expression profile of ΔNp63α in cervical squamous cancers and its suppressive effects on LIF expression., Cytokine
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TNPO3-1:9
4.0 lnc-TNPO3-1:9
4.1 lnc-TNPO3-1:9
5.0 lnc-TNPO3-1:9
5.1 FLNC-AS1:4
5.2 FLNC-AS1:9