Transcript: FLVCR1-DT:19

Basic information

LNCipedia transcript ID: FLVCR1-DT:19 
LNCipedia gene ID: FLVCR1-DT
Location (hg38): chr1:212855477-212858110
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1790 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001813; NONHSAT009409
Alternative gene names: XLOC_001197; linc-C1orf227-1; LQK1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.8202 non-coding 
CPAT coding probability 6.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FLVCR1-DT:19 no no no no

Available literature

  1. Zhang (2018), LncRNA FLVCR1-AS1 acts as miR-513c sponge to modulate cancer cell proliferation, migration, and invasion in hepatocellular carcinoma., J. Cell. Biochem.
  2. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE
  3. Lipovich (2002), Genomic structure and evolutionary context of the human feline leukemia virus subgroup C receptor (hFLVCR) gene: evidence for block duplications and de novo gene formation within duplicons of the hFLVCR locus., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf227-1:2
3.1 lnc-C1orf227-1:2
4.0 FLVCR1-AS1:4
4.1 FLVCR1-AS1:4
5.0 FLVCR1-AS1:4
5.1 FLVCR1-DT:5
5.2 FLVCR1-DT:19