Transcript: FMR1-AS1:14

Basic information

LNCipedia transcript ID: FMR1-AS1:14 
LNCipedia gene ID: FMR1-AS1
Location (hg38): chrX:147909431-147911784
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2354 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000268066.1|ENST00000601841.1
Alternative gene names: ASFMR1; FMR4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -142.4201 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FMR1-AS1:14 no no no no

Available literature

  1. Khalil (2008), A novel RNA transcript with antiapoptotic function is silenced in fragile X syndrome., PLoS ONE
  2. Ladd (2007), An antisense transcript spanning the CGG repeat region of FMR1 is upregulated in premutation carriers but silenced in full mutation individuals., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FMR1-AS1:14
5.0 FMR1-AS1:14
5.1 FMR1-AS1:14
5.2 FMR1-AS1:14