Transcript: FOCAD-AS1:2

Basic information

LNCipedia transcript ID: FOCAD-AS1:2 
HGNC Gene Symbol: FOCAD-AS1    
HGNC Full Gene Name: FOCAD antisense RNA 1
Ensembl Gene ID: ENSG00000227071
Ensembl Transcript ID: ENST00000439876
Location (hg38): chr9:20683304-20684688
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 359 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439876; ENST00000439876.1; RP11-4E23.2-001; OTTHUMT00000051870.1; NONHSAT130353
Alternative gene names: ENSG00000227071; RP11-4E23.2; ENSG00000227071.1; OTTHUMG00000019649.1; FOCAD-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -232.7493 non-coding 
CPAT coding probability 1.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOCAD-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MLLT3-1:1
3.1 lnc-MLLT3-1:1
4.0 FOCAD-AS1:2
4.1 FOCAD-AS1:2
5.0 FOCAD-AS1:2
5.1 FOCAD-AS1:2
5.2 FOCAD-AS1:2