Transcript: FOXC2-AS1:4

Basic information

LNCipedia transcript ID: FOXC2-AS1:4 
LNCipedia gene ID: FOXC2-AS1
Location (hg38): chr16:86564915-86567845
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 948 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260944.1|MICT00000137691.1
Alternative gene names: ODRUL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 50.1675 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FOXC2-AS1:4 yes no no no

Available literature

  1. Zhu (2017), LncRNA ODRUL Contributes to Osteosarcoma Progression through the miR-3182/MMP2 Axis., Mol. Ther.
  2. Zhang (2016), A long non-coding RNA contributes to doxorubicin resistance of osteosarcoma., Tumour Biol.
  3. Zhu (2015), Long noncoding RNA expression profiles of the doxorubicin-resistant human osteosarcoma cell line MG63/DXR and its parental cell line MG63 as ascertained by microarray analysis., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 FOXC2-AS1:4
5.0 FOXC2-AS1:4
5.1 FOXC2-AS1:4
5.2 FOXC2-AS1:4