Transcript: FOXCUT:6

Basic information

LNCipedia transcript ID: FOXCUT:6 
LNCipedia gene ID: FOXCUT
RefSeq ID: NR_125804
Location (hg38): chr6:1605531-1607358
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1612 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125804.1
Alternative gene names: FOXCUT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -86.7806 non-coding 
CPAT coding probability 38.63% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FOXCUT:6 no no no no

Available literature

  1. Kong (2014), The expression and functional role of a FOXC1 related mRNA-lncRNA pair in oral squamous cell carcinoma., Mol. Cell. Biochem.
  2. Pan (2014), A novel long non-coding RNA FOXCUT and mRNA FOXC1 pair promote progression and predict poor prognosis in esophageal squamous cell carcinoma., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 FOXCUT:6
5.1 FOXCUT:6
5.2 FOXCUT:6