Transcript: FOXD2-AS1:2

Basic information

LNCipedia transcript ID: FOXD2-AS1:2 
LNCipedia gene ID: FOXD2-AS1
Location (hg38): chr1:47432135-47434641
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2507 bp
Exons: 1
Sources: Refseq - Dec 2014
Alternative transcript names: NR_026878
Alternative gene names: MGC12982


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.001 non-coding 
CPAT coding probability 16.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXD2-AS1:2 no no no no

Available literature

  1. Rong (2017), Highly expressed long non-coding RNA FOXD2-AS1 promotes non-small cell lung cancer progression via Wnt/β-catenin signaling., Biochem. Biophys. Res. Commun.
  2. Yang (2017), Long non-coding RNA FOXD2-AS1 functions as a tumor promoter in colorectal cancer by regulating EMT and Notch signaling pathway., Eur Rev Med Pharmacol Sci
  3. Zhang (2015), Cancer Specific Long Noncoding RNAs Show Differential Expression Patterns and Competing Endogenous RNA Potential in Hepatocellular Carcinoma., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-STIL-2:2
4.0 FOXD2-AS1:2
4.1 FOXD2-AS1:2
5.0 FOXD2-AS1:2
5.1 FOXD2-AS1:2
5.2 FOXD2-AS1:2