Transcript: FOXD3-AS1:6

Basic information

LNCipedia transcript ID: FOXD3-AS1:6 
HGNC Gene Symbol: FOXD3-AS1    
HGNC Full Gene Name: FOXD3 antisense RNA 1
Ensembl Gene ID: ENSG00000230798
Ensembl Transcript ID: ENST00000449386
RefSeq ID: NR_121635
Location (hg38): chr1:63320884-63322458
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 547 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000449386.1; RP4-792G4.2-002; OTTHUMT00000025325.1; NONHSAT003668; NR_121635; ENST00000449386.5; NR_121635.1
Alternative gene names: ENSG00000230798.1; RP4-792G4.2; OTTHUMG00000009138.1; ENSG00000230798.5; FOXD3-AS1; pasFOXD3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.462 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXD3-AS1:6 no no no no

Available literature

  1. Zhang (2017), Long noncoding RNA FOXD3-AS1 regulates oxidative stress-induced apoptosis <i>via</i> sponging microRNA-150., FASEB J.
  2. Chen (2016), Down-regulation of long non-coding RNA FOXD3 antisense RNA 1 (FOXD3-AS1) inhibits cell proliferation, migration, and invasion in malignant glioma cells., Am J Transl Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGB3BP-1:3
4.0 FOXD3-AS1:6
4.1 FOXD3-AS1:6
5.0 FOXD3-AS1:6
5.1 FOXD3-AS1:6
5.2 FOXD3-AS1:6