Transcript: FOXN3-AS1:1

Basic information

LNCipedia transcript ID: FOXN3-AS1:1 
HGNC Gene Symbol: FOXN3-AS1    
HGNC Full Gene Name: FOXN3 antisense RNA 1
Ensembl Gene ID: ENSG00000258920
Ensembl Transcript ID: ENST00000555562
RefSeq ID: NR_036500
Location (hg38): chr14:89417354-89419793
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1077 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT039186; NR_036500; ENST00000555562.1; NR_036500.1
Alternative gene names: ENSG00000258920.1; FOXN3-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.4929 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXN3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-33N16.1.1-5:1
4.0 FOXN3-AS1:1
4.1 FOXN3-AS1:1
5.0 FOXN3-AS1:1
5.1 FOXN3-AS1:1
5.2 FOXN3-AS1:1