Transcript: FOXP4-AS1:2

Basic information

LNCipedia transcript ID: FOXP4-AS1:2 
HGNC Gene Symbol: FOXP4-AS1    
HGNC Full Gene Name: FOXP4 antisense RNA 1
Ensembl Gene ID: ENSG00000234753
Ensembl Transcript ID: ENST00000432751
Location (hg38): chr6:41523905-41547548
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 409 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432751.1; RP11-328M4.2-002; OTTHUMT00000040515.2; NONHSAT112744
Alternative gene names: ENSG00000234753.1; RP11-328M4.2; OTTHUMG00000014680.3; ENSG00000234753.5; FOXP4-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.135 non-coding 
CPAT coding probability 14.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
FOXP4-AS1:2 no no no no

Available literature

  1. Li (2017), Long non-coding RNA FOXP4-AS1 is an unfavourable prognostic factor and regulates proliferation and apoptosis in colorectal cancer., Cell Prolif.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TFEB-1:2
4.0 FOXP4-AS1:2
4.1 FOXP4-AS1:2
5.0 FOXP4-AS1:2
5.1 FOXP4-AS1:2
5.2 FOXP4-AS1:2