Transcript: FRMPD3-AS1:1

Basic information

LNCipedia transcript ID: FRMPD3-AS1:1 
HGNC Gene Symbol: FRMPD3-AS1    
HGNC Full Gene Name: FRMPD3 antisense RNA 1
Ensembl Gene ID: ENSG00000227610
Ensembl Transcript ID: ENST00000415252
RefSeq ID: NR_046750
Location (hg38): chrX:107512983-107545821
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 457 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00017080; ENST00000415252.1; FRMPD3-AS1-001; OTTHUMT00000057837.1; NR_046750; NR_046750.1
Alternative gene names: XLOC_008205; linc-NUP62CL; ENSG00000227610.1; FRMPD3-AS1; OTTHUMG00000022164.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -370.153 non-coding 
CPAT coding probability 37.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
FRMPD3-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSC22D3-1:1
3.1 lnc-TSC22D3-1:1
4.0 FRMPD3-AS1:1
4.1 FRMPD3-AS1:1
5.0 FRMPD3-AS1:1
5.1 FRMPD3-AS1:1
5.2 FRMPD3-AS1:1