Transcript: G2E3-AS1:10

Basic information

LNCipedia transcript ID: G2E3-AS1:10 
LNCipedia gene ID: G2E3-AS1
Location (hg38): chr14:30469176-30503271
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 611 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000550118.1; RP11-1103G16.1-003; OTTHUMT00000409437.1; NONHSAT036228
Alternative gene names: ENSG00000257636.1; RP11-1103G16.1; OTTHUMG00000170510.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.6255 non-coding 
CPAT coding probability 0.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
G2E3-AS1:10 no no no no

Available literature

  1. Dudek (2017), Identification of long non-coding RNAs that stimulate cell survival in bladder cancer., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRKD1-2:2
4.0 lnc-PRKD1-2:2
4.1 lnc-PRKD1-2:2
5.0 lnc-PRKD1-2:2
5.1 G2E3-AS1:3
5.2 G2E3-AS1:10