Transcript: GABPB1-AS1:6

Basic information

LNCipedia transcript ID: GABPB1-AS1:6 
HGNC Gene Symbol: GABPB1-AS1    
HGNC Full Gene Name: GABPB1 antisense RNA 1
Ensembl Gene ID: ENSG00000244879
Ensembl Transcript ID: ENST00000560359
Location (hg38): chr15:50355328-50356370
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 709 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000560359.1; CTD-3110H11.2-005; OTTHUMT00000418306.1; NONHSAT042408
Alternative gene names: ENSG00000244879.2; CTD-3110H11.2; OTTHUMG00000172396.1; ENSG00000244879.3; GABPB1-AS1; ENSG00000244879.4; ; ENSG00000244879.5; ENSG00000244879.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.3088 non-coding 
CPAT coding probability 12.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-AS1:6 yes no no no

Available literature

  1. Chakravarty (2014), The oestrogen receptor alpha-regulated lncRNA NEAT1 is a critical modulator of prostate cancer., Nat Commun
  2. Tani (2014), Long non-coding RNAs as surrogate indicators for chemical stress responses in human-induced pluripotent stem cells., PLoS ONE
  3. Tani (2013), Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response., Biochem. Biophys. Res. Commun.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-USP8-2:2
4.0 GABPB1-AS1:6
4.1 GABPB1-AS1:6
5.0 GABPB1-AS1:6
5.1 GABPB1-AS1:6
5.2 GABPB1-AS1:6