Transcript: GABPB1-IT1:4

Basic information

LNCipedia transcript ID: GABPB1-IT1:4 
HGNC Gene Symbol: GABPB1-IT1    
HGNC Full Gene Name: GABPB1 intronic transcript
RefSeq ID: NR_026891
Location (hg38): chr15:50348936-50354879
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5944 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_026891.1
Alternative gene names: FLJ10038


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.6376 non-coding 
CPAT coding probability 11.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-IT1:4 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 GABPB1-IT1:4
5.1 GABPB1-IT1:4
5.2 GABPB1-IT1:4