Transcript: GABPB1-IT1:6

Basic information

LNCipedia transcript ID: GABPB1-IT1:6 
LNCipedia gene ID: GABPB1-IT1
Ensembl Gene ID: ENSG00000285410
Ensembl Transcript ID: ENST00000615671
Location (hg38): chr15:50348936-50354861
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 5926 bp
Exons: 1
Sources: Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615671.2
Alternative gene names: ENSG00000285410.1; GABPB1-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -23.6376 non-coding 
CPAT coding probability 11.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-IT1:6 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 GABPB1-IT1:6
5.1 GABPB1-IT1:6
5.2 GABPB1-IT1:6