Transcript: GABPB1-IT1:9

Basic information

LNCipedia transcript ID: GABPB1-IT1:9 
LNCipedia gene ID: GABPB1-IT1
Location (hg38): chr15:50347550-50354873
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1021 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT042403
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0957 non-coding 
CPAT coding probability 24.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GABPB1-IT1:9 yes no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDC-2:3
4.0 lnc-HDC-2:3
4.1 lnc-HDC-2:3
5.0 lnc-HDC-2:3
5.1 GABPB1-IT1:5
5.2 GABPB1-IT1:9