Transcript: GACAT1:1
Basic information
LNCipedia transcript ID: GACAT1:1
HGNC Gene Symbol: GACAT1
HGNC Full Gene Name:
gastric cancer associated transcript 1
Ensembl Gene ID:
ENSG00000232991
Ensembl Transcript ID:
ENST00000441383
RefSeq ID:
NR_126370
Location (hg38): chr2:107754112-107822129
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00002974; ENST00000441383; ENST00000441383.1; AC096655.1-001; OTTHUMT00000330678.1; NONHSAT073072; NR_126370; ENST00000441383.5; NR_126370.1
Alternative gene names: XLOC_001620; linc-RGPD4-1; ENSG00000232991; AC096655.1; ENSG00000232991.1; OTTHUMG00000153313.1; GACAT1; ENSG00000232991.5; LINC00876; AC096655.1-002
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| GACAT1:1 | no | no | no | no |
Available literature
- Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
- Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep
- Sun (2013), Decreased expression of long noncoding RNA AC096655.1-002 in gastric cancer and its clinical significance., Tumour Biol.
- Xiao (2013), Long noncoding RNA AC096655.1-002 has been officially named as gastric cancer-associated transcript 1, GACAT1., Tumour Biol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-RGPD4-1:1 |
| 3.1 | lnc-RGPD4-1:1 |
| 4.0 | GACAT1:1 |
| 4.1 | GACAT1:1 |
| 5.0 | GACAT1:1 |
| 5.1 | GACAT1:1 |
| 5.2 | GACAT1:1 |