Transcript: GACAT1:2

Basic information

LNCipedia transcript ID: GACAT1:2 
LNCipedia gene ID: GACAT1
RefSeq ID: NR_126369
Location (hg38): chr2:107754112-107812348
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 610 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126369; NR_126369.1
Alternative gene names: LINC00876; AC096655.1-002; GACAT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -160.9049 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT1:2 no no no no

Available literature

  1. Li (2014), Non-coding RNAs and gastric cancer., World J. Gastroenterol.
  2. Xia (2014), Long noncoding RNA associated-competing endogenous RNAs in gastric cancer., Sci Rep
  3. Sun (2013), Decreased expression of long noncoding RNA AC096655.1-002 in gastric cancer and its clinical significance., Tumour Biol.
  4. Xiao (2013), Long noncoding RNA AC096655.1-002 has been officially named as gastric cancer-associated transcript 1, GACAT1., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RGPD4-1:3
4.0 GACAT1:2
4.1 GACAT1:2
5.0 GACAT1:2
5.1 GACAT1:2
5.2 GACAT1:2