Transcript: GACAT3:1
Basic information
LNCipedia transcript ID: GACAT3:1
HGNC Gene Symbol: GACAT3
HGNC Full Gene Name:
gastric cancer associated transcript 3
Ensembl Gene ID:
ENSG00000236289
Ensembl Transcript ID:
ENST00000426539
Location (hg38): chr2:16050427-16085801
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1096 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00002831; ENST00000426539; ENST00000426539.1; AC130710.1-001; OTTHUMT00000323739.1; NONHSAT069315
Alternative gene names: XLOC_001365; linc-VSNL1-8; ENSG00000236289; AC130710.1; ENSG00000236289.2; OTTHUMG00000151744.2; GACAT3; lncRNA-AC130710
RNA sequence:
Structure:
Protein coding potential
In stringent set: yes
Locus conservation
| Locus conservation? |  |
 |
 |
 |
|---|---|---|---|---|
| GACAT3:1 | no | no | no | no |
Available literature
- Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
- Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
- Xu (2014), lncRNA-AC130710 targeting by miR-129-5p is upregulated in gastric cancer and associates with poor prognosis., Tumour Biol.
LNCipedia transcript ID history
| LNCipedia version | LNCipedia transcript ID |
|---|---|
| 1.3 | lnc-MYCN-2:1 |
| 3.1 | lnc-MYCN-2:1 |
| 4.0 | GACAT3:1 |
| 4.1 | GACAT3:1 |
| 5.0 | GACAT3:1 |
| 5.1 | GACAT3:1 |
| 5.2 | GACAT3:1 |