Transcript: GACAT3:2

Basic information

LNCipedia transcript ID: GACAT3:2 
LNCipedia gene ID: GACAT3
RefSeq ID: NR_126559
Location (hg38): chr2:16050427-16085689
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 984 bp
Exons: 4
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126559; NR_126559.1
Alternative gene names: lncRNA-AC130710; GACAT3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -76.3624 non-coding 
CPAT coding probability 1.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT3:2 no no no no

Available literature

  1. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  2. Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
  3. Xu (2014), lncRNA-AC130710 targeting by miR-129-5p is upregulated in gastric cancer and associates with poor prognosis., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MYCN-2:4
4.0 GACAT3:2
4.1 GACAT3:2
5.0 GACAT3:2
5.1 GACAT3:2
5.2 GACAT3:2