Transcript: GACAT3:3

Basic information

LNCipedia transcript ID: GACAT3:3 
LNCipedia gene ID: GACAT3
Location (hg38): chr2:16073398-16081117
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 474 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00002832; NONHSAT069317
Alternative gene names: XLOC_001365; linc-VSNL1-8; lncRNA-AC130710


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.4769 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GACAT3:3 no no no no

Available literature

  1. Guo (2015), Competing endogenous RNA networks and gastric cancer., World J. Gastroenterol.
  2. Chen (2014), Long noncoding RNA HMlincRNA717 and AC130710 have been officially named as gastric cancer associated transcript 2 (GACAT2) and GACAT3, respectively., Tumour Biol.
  3. Xu (2014), lncRNA-AC130710 targeting by miR-129-5p is upregulated in gastric cancer and associates with poor prognosis., Tumour Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MYCN-2:2
3.1 lnc-MYCN-2:3
4.0 GACAT3:3
4.1 GACAT3:3
5.0 GACAT3:3
5.1 GACAT3:3
5.2 GACAT3:3