Transcript: GAS1RR:20

Basic information

LNCipedia transcript ID: GAS1RR:20 
LNCipedia gene ID: GAS1RR
Location (hg38): chr9:86948678-86982186
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 521 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000226237.1|FTMT23500036116.1
Alternative gene names: LncRNA-Hh


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -196.7233 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS1RR:20 no no no no

Available literature

  1. Zhou (2016), LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway., Stem Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 GAS1RR:20
5.0 GAS1RR:20
5.1 GAS1RR:20
5.2 GAS1RR:20