Transcript: GAS1RR:6

Basic information

LNCipedia transcript ID: GAS1RR:6 
HGNC Gene Symbol: GAS1RR    
HGNC Full Gene Name: GAS1 adjacent regulatory RNA
Ensembl Gene ID: ENSG00000226237
Ensembl Transcript ID: ENST00000415801
Location (hg38): chr9:86948699-87002033
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4387 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415801; ENST00000415801.1; RP11-276H19.1-001; OTTHUMT00000052930.1
Alternative gene names: ENSG00000226237; RP11-276H19.1; ENSG00000226237.1; OTTHUMG00000020143.1; LncRNA-Hh; GAS1RR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.6739 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS1RR:6 no no no no

Available literature

  1. Zhou (2016), LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway., Stem Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf170-1:5
3.1 lnc-C9orf170-1:5
4.0 GAS1RR:6
4.1 GAS1RR:6
5.0 GAS1RR:6
5.1 GAS1RR:6
5.2 GAS1RR:6