Transcript: GAS1RR:8

Basic information

LNCipedia transcript ID: GAS1RR:8 
LNCipedia gene ID: GAS1RR
Location (hg38): chr9:86948789-86950974
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 540 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016045; NONHSAT132846
Alternative gene names: XLOC_007438; linc-C9orf170-1; LncRNA-Hh


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.7233 non-coding 
CPAT coding probability 4.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS1RR:8 no no no no

Available literature

  1. Zhou (2016), LncRNA-Hh Strengthen Cancer Stem Cells Generation in Twist-Positive Breast Cancer via Activation of Hedgehog Signaling Pathway., Stem Cells


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf170-1:7
3.1 lnc-C9orf170-1:7
4.0 GAS1RR:8
4.1 GAS1RR:8
5.0 GAS1RR:8
5.1 GAS1RR:8
5.2 GAS1RR:8