Transcript: GAS5-AS1:1

Basic information

LNCipedia transcript ID: GAS5-AS1:1 
LNCipedia gene ID: GAS5-AS1
Location (hg38): chr1:173862152-173863941
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 853 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000336; ENST00000416578; ENST00000416578.1; RP5-1198E17.1-001; OTTHUMT00000090606.1; NONHSAT007660
Alternative gene names: XLOC_000467; linc-ZBTB37; ENSG00000231792; RP5-1198E17.1; ENSG00000231792.1; OTTHUMG00000037217.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.6861 non-coding 
CPAT coding probability 0.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS5-AS1:1 no no no no

Available literature

  1. Lin (2017), LncRNA GAS5-AS1 inhibits myofibroblasts activities in oral submucous fibrosis., J. Formos. Med. Assoc.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DARS2-1:1
3.1 lnc-DARS2-1:1
4.0 GAS5-AS1:1
4.1 GAS5-AS1:1
5.0 GAS5-AS1:1
5.1 GAS5-AS1:1
5.2 GAS5-AS1:1