Transcript: GAS8-AS1:1

Basic information

LNCipedia transcript ID: GAS8-AS1:1 
HGNC Gene Symbol: GAS8-AS1    
HGNC Full Gene Name: GAS8 antisense RNA 1
Ensembl Gene ID: ENSG00000221819
Ensembl Transcript ID: ENST00000408886
RefSeq ID: NR_122031
Location (hg38): chr16:90028908-90029901
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 994 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_122031; NR_122031.1; ENST00000408886.4
Alternative gene names: ; GAS8-AS1; ENSG00000221819.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -151.5078 non-coding 
CPAT coding probability 27.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS8-AS1:1 yes no no no

Available literature

  1. Zhang (2017), Plasma lncRNA GAS8-AS1 as a Potential Biomarker of Papillary Thyroid Carcinoma in Chinese Patients., Int J Endocrinol
  2. Pan (2016), Whole exome sequencing identifies lncRNA GAS8-AS1 and LPAR4 as novel papillary thyroid carcinoma driver alternations., Hum. Mol. Genet.
  3. Whitmore (1998), Characterization and screening for mutations of the growth arrest-specific 11 (GAS11) and C16orf3 genes at 16q24.3 in breast cancer., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf3-3:1
4.0 GAS8-AS1:1
4.1 GAS8-AS1:1
5.0 GAS8-AS1:1
5.1 GAS8-AS1:1
5.2 GAS8-AS1:1