Transcript: GAS8-AS1:2

Basic information

LNCipedia transcript ID: GAS8-AS1:2 
HGNC Gene Symbol: GAS8-AS1    
HGNC Full Gene Name: GAS8 antisense RNA 1
Ensembl Gene ID: ENSG00000221819
Ensembl Transcript ID: ENST00000623094
Location (hg38): chr16:90028935-90029367
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 433 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000623094.2
Alternative gene names: ENSG00000221819.5; GAS8-AS1; ; ENSG00000221819.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -389.2797 non-coding 
CPAT coding probability 27.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS8-AS1:2 yes no no no

Available literature

  1. Zhang (2017), Plasma lncRNA GAS8-AS1 as a Potential Biomarker of Papillary Thyroid Carcinoma in Chinese Patients., Int J Endocrinol
  2. Pan (2016), Whole exome sequencing identifies lncRNA GAS8-AS1 and LPAR4 as novel papillary thyroid carcinoma driver alternations., Hum. Mol. Genet.
  3. Whitmore (1998), Characterization and screening for mutations of the growth arrest-specific 11 (GAS11) and C16orf3 genes at 16q24.3 in breast cancer., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 GAS8-AS1:2
4.1 GAS8-AS1:2
5.0 GAS8-AS1:2
5.1 GAS8-AS1:2
5.2 GAS8-AS1:2