Transcript: GAS8-AS1:3

Basic information

LNCipedia transcript ID: GAS8-AS1:3 
LNCipedia gene ID: GAS8-AS1
Location (hg38): chr16:90028908-90029342
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 435 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000408886.3
Alternative gene names: ENSG00000221819.5; GAS8-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -280.0917 non-coding 
CPAT coding probability 27.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GAS8-AS1:3 yes no no no

Available literature

  1. Zhang (2017), Plasma lncRNA GAS8-AS1 as a Potential Biomarker of Papillary Thyroid Carcinoma in Chinese Patients., Int J Endocrinol
  2. Pan (2016), Whole exome sequencing identifies lncRNA GAS8-AS1 and LPAR4 as novel papillary thyroid carcinoma driver alternations., Hum. Mol. Genet.
  3. Whitmore (1998), Characterization and screening for mutations of the growth arrest-specific 11 (GAS11) and C16orf3 genes at 16q24.3 in breast cancer., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 GAS8-AS1:3
4.1 GAS8-AS1:3
5.0 GAS8-AS1:3
5.1 GAS8-AS1:3
5.2 GAS8-AS1:3