Transcript: GATA2-AS1:1

Basic information

LNCipedia transcript ID: GATA2-AS1:1 
LNCipedia gene ID: GATA2-AS1
RefSeq ID: NR_125398
Location (hg38): chr3:128489203-128503207
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2358 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125398; NR_125398.1
Alternative gene names: ; GATA2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -68.2093 non-coding 
CPAT coding probability 3.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GATA2-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EEFSEC-3:4
4.0 GATA2-AS1:1
4.1 GATA2-AS1:1
5.0 GATA2-AS1:1
5.1 GATA2-AS1:1
5.2 GATA2-AS1:1