Transcript: GATA2-AS1:3

Basic information

LNCipedia transcript ID: GATA2-AS1:3 
HGNC Gene Symbol: GATA2-AS1    
HGNC Full Gene Name: GATA2 antisense RNA 1
Ensembl Gene ID: ENSG00000244300
Ensembl Transcript ID: ENST00000468377
Location (hg38): chr3:128489232-128502348
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1578 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000468377; ENST00000468377.1; RP11-475N22.4-001; OTTHUMT00000356936.1; NONHSAT091769
Alternative gene names: ENSG00000244300; RP11-475N22.4; ENSG00000244300.2; OTTHUMG00000159693.1; GATA2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -68.2093 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
GATA2-AS1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EEFSEC-3:2
3.1 lnc-EEFSEC-3:2
4.0 GATA2-AS1:3
4.1 GATA2-AS1:3
5.0 GATA2-AS1:3
5.1 GATA2-AS1:3
5.2 GATA2-AS1:3